Open files in .cool, .mcool, .scool, and .hic format
Usage
hictkR_open(path, resolution = NULL, cell = NULL)
Arguments
- path
path to the file to be opened (Cooler URI syntax is supported).
- resolution
resolution of the file to be opened.
Required when file is in .hic format.
- cell
name of the cell to be opened.
Ignored when file is not in .scool format.
Value
a file handle of the appropriate type.
Examples
if (FALSE) { # \dontrun{
hictkR_open("interactions.cool")
hictkR_open("interactions.mcool")
hictkR_open("interactions.scool")
hictkR_open("interactions.mcool", resolution=10000)
hictkR_open("interactions.hic", resolution=10000)
hictkR_open("interactions.scool", cell="id_0001")
} # }